PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORGLA02G0162000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 498aa    MW: 55066.5 Da    PI: 4.5033
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORGLA02G0162000.1genomeAGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.18e-35681602103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y+++ ++el+ +isw + gnsfvv+d++ fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+l
  ORGLA02G0162000.1  68 FLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHL 150
                        9****************************************************************999.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l+ki r++s+
  ORGLA02G0162000.1 151 LKKIVRRRSS 160
                        ******9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3764157IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.2E-5564157IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3464157IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.3E-3168157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-166891IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-16106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340107131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-16119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDHNTDPPPT TMVDAAAALL LEPKLEGYDD DGGGEPLQPA PFVSPLDQLM QPPRPLEALL  60
QGPQLPPFLS KTYDLVCEPE LDGVISWGHA GNSFVVWDPS AFARDVLPHH FKHNNFSSFV  120
RQLNTYGFRK VHADRWEFAH EDFLRHSKHL LKKIVRRRSS PTQQSGLQPG SSGESGLDPE  180
LNTLRREKSA LLQEVTRLKQ EHLQTIEQMS TLNQRLESAE DRQKQMVSFL AKLLQNPTFL  240
RQLKVHRQQK EIDSTRVKRK FLKHVPHGNI DSGESSSQHT GESNLDFSPT SLDLPATHSD  300
ILDLQNFLLE DGDLNLAMLP ENIGLDGIEA PDDIGALVQG FDTQEELELG SGVELLEIPP  360
ASGPRGQDPT IGRSKGKNVL SPGLDATSSE ADCLGSFSDN MGMLSDSMLQ TAGKLMDADD  420
DERIWGVDAS SALQSSCSGT SQQAYGSLVS DPYLMEMANK PEKFWELDFQ ALDDGDLQLD  480
KCVIDDPALQ QQRGNMNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-246016011123Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019340.0AK101934.1 Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623061.10.0PREDICTED: heat stress transcription factor A-3
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A0D3F5V40.0A0A0D3F5V4_9ORYZ; Uncharacterized protein
TrEMBLI1P0W40.0I1P0W4_ORYGL; Uncharacterized protein
STRINGORGLA02G0162000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.14e-70heat shock transcription factor A3